diff --git a/Cargo.lock b/Cargo.lock
index ee81d1a9..0ce89417 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1143,7 +1143,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
 dependencies = [
  "libc",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -1244,15 +1244,6 @@ version = "1.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "42703706b716c37f96a77aea830392ad231f44c9e9a67872fa5548707e11b11c"
 
-[[package]]
-name = "fsevent-sys"
-version = "4.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "76ee7a02da4d231650c7cea31349b889be2f45ddb3ef3032d2ec8185f6313fd2"
-dependencies = [
- "libc",
-]
-
 [[package]]
 name = "futures"
 version = "0.3.32"
@@ -1800,9 +1791,9 @@ dependencies = [
 
 [[package]]
 name = "interprocess"
-version = "2.4.6"
+version = "2.4.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7529951166d4dd4d2a6b9f0bb97919b810623f75eeb76e81ee9e6644886cae37"
+checksum = "a4a4fff6c51dece332bdbf3af5fe376c49cfc8dced782725e95be0bb489e35d7"
 dependencies = [
  "doctest-file",
  "futures-core",
@@ -1984,9 +1975,9 @@ dependencies = [
 
 [[package]]
 name = "libsqlite3-sys"
-version = "0.38.2"
+version = "0.39.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f1d20bef17f513b9b3004532233187769cd072d790971f4e4da0e346eb6401e8"
+checksum = "14a5f01b87b92705d07b433c06f96cbc764637d81a0bffb5734ce17cf0f9a2b3"
 dependencies = [
  "cc",
  "pkg-config",
@@ -2107,20 +2098,21 @@ checksum = "61807f77802ff30975e01f4f071c8ba10c022052f98b3294119f3e615d13e5be"
 
 [[package]]
 name = "notify"
-version = "8.2.0"
+version = "8.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4d3d07927151ff8575b7087f245456e549fea62edf0ec4e565a5ee50c8402bc3"
+checksum = "82f812702fbc75d35416d3f884e04925be7e9498f4eceea2e24ba34559284674"
 dependencies = [
  "bitflags",
- "fsevent-sys",
  "inotify",
  "kqueue",
  "libc",
  "log",
  "mio",
  "notify-types",
+ "objc2-core-foundation",
+ "objc2-core-services",
  "walkdir",
- "windows-sys 0.60.2",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -2165,6 +2157,25 @@ dependencies = [
  "libc",
 ]
 
+[[package]]
+name = "objc2-core-foundation"
+version = "0.3.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2a180dd8642fa45cdb7dd721cd4c11b1cadd4929ce112ebd8b9f5803cc79d536"
+dependencies = [
+ "bitflags",
+]
+
+[[package]]
+name = "objc2-core-services"
+version = "0.3.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "583300ad934cba24ff5292aee751ecc070f7ca6b39a574cc21b7b5e588e06a0b"
+dependencies = [
+ "libc",
+ "objc2-core-foundation",
+]
+
 [[package]]
 name = "once_cell"
 version = "1.21.4"
@@ -2384,7 +2395,7 @@ dependencies = [
  "once_cell",
  "socket2",
  "tracing",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -2580,9 +2591,9 @@ dependencies = [
 
 [[package]]
 name = "rmcp"
-version = "3.5.1"
+version = "3.7.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ab5023804cbe0304cbe06197ac16e645a0a0d0ffa2953bf735c15c2fa0213350"
+checksum = "ece64e19631fc38758181e637c15509a2c2709ee53bfde1e1d58f9dc991f919e"
 dependencies = [
  "async-trait",
  "base64 0.23.0",
@@ -2593,6 +2604,7 @@ dependencies = [
  "http-body",
  "http-body-util",
  "indexmap",
+ "libc",
  "pastey",
  "pin-project-lite",
  "rand",
@@ -2612,9 +2624,9 @@ dependencies = [
 
 [[package]]
 name = "rmcp-macros"
-version = "3.6.0"
+version = "3.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2f55ef2d84752d676d735604548fcb65811504e23330d85670b0eff5f8735144"
+checksum = "8b0748e054a5f5598b3213cf72099ae6b2745ba4d996c59ccf455150a7dbb839"
 dependencies = [
  "darling",
  "proc-macro2",
@@ -2664,9 +2676,9 @@ dependencies = [
 
 [[package]]
 name = "rusqlite"
-version = "0.40.2"
+version = "0.41.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23f2a97da3e3873c73cb2a2e71b35c40ff95e0b1eefa8d72d8499a6928c3b5b3"
+checksum = "da9bba6f3506135e120a6586df05be18b48d18896600646a4bec8f993d91a594"
 dependencies = [
  "bitflags",
  "fallible-iterator",
@@ -2702,7 +2714,7 @@ dependencies = [
  "errno",
  "libc",
  "linux-raw-sys",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -2771,7 +2783,7 @@ dependencies = [
  "security-framework",
  "security-framework-sys",
  "webpki-root-certs",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -2878,9 +2890,9 @@ dependencies = [
 
 [[package]]
 name = "self_update"
-version = "1.3.1"
+version = "1.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9253f1675d280b3e348d63a03ad6af3fa32d515b0959406758342561655c4aa0"
+checksum = "db894dc81dc2d26b41c4966e3e67ab2e0c21289912edd262012a07da9e4e0201"
 dependencies = [
  "flate2",
  "http",
@@ -3217,7 +3229,7 @@ dependencies = [
  "getrandom 0.4.3",
  "once_cell",
  "rustix",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -3325,9 +3337,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20"
 
 [[package]]
 name = "tokio"
-version = "1.53.3"
+version = "1.54.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ce3335fa71841cda333a58d7615b03901380ecf09d59b3296d21f8bbac0dde4e"
+checksum = "b52fd3255258d26fac7264ab5a76b53c13367136dc011d3d6ad4f8ed070396a3"
 dependencies = [
  "bytes",
  "libc",
@@ -3572,9 +3584,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter"
-version = "0.27.0"
+version = "0.27.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2038684e0058edba0d17302619f62eabce4a8e11c6ac59506996a8d79848851d"
+checksum = "a5129de2ccc97808c4583d48f1fb44576d015cf241e432800572bda11ef30c3b"
 dependencies = [
  "cc",
  "regex",
@@ -3615,9 +3627,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-cfml"
-version = "0.26.42"
+version = "0.26.43"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf1c57e5c21ce03a08338c67441b40125227066634297ea0c2c8621372541e95"
+checksum = "68ebd7091acf7ec18caf8e99c6b95116bc03b04173244d8ef26c0c185631bb9a"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -3645,9 +3657,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-dart"
-version = "0.2.0"
+version = "0.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "325dd1e24ee9ee21111e9c43680ae7d6010aaa9f282b048a99b9c7163c1cf553"
+checksum = "973ff905142c61200ef0bf5e226f03a5f20a9a7d3a0ae2c4c86cdb42f98b63eb"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -3655,9 +3667,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-erlang"
-version = "0.20.0"
+version = "0.21.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3107efc581d335488dc38d2f51ca8b7a6a98e36f07f95a8e963f031edda6f568"
+checksum = "8079a9cfe733c3b6749bb3c683c0e997ee68a2305f7a210800bbbc53e82d3f64"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -3745,9 +3757,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-language"
-version = "0.1.8"
+version = "0.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ca0d1bf6fdd806e43ae5198f82f527056d359def39e54e67a0f478ac09dac081"
+checksum = "d0af592be68c579aa78a16846bd19422978c3c52e438523d45ff5d1bff1f9d4a"
 
 [[package]]
 name = "tree-sitter-lua"
@@ -3801,9 +3813,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-php"
-version = "0.24.2"
+version = "0.25.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0d8c17c3ab69052c5eeaa7ff5cd972dd1bc25d1b97ee779fec391ad3b5df5592"
+checksum = "d9779e392d38af4254f48be0e57b7eed4d50ec7a6e55a7e5e2e74df8f8f032d3"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -3861,9 +3873,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-scala"
-version = "0.26.2"
+version = "0.26.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "24e0ab4505990bfe30051761d40a7bf4033ce5a81c9eda9e20e987a5cdc84826"
+checksum = "c554730d29306d9c7cdd26912638d2401378c26961e12d161a071df43f49b81b"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -3881,9 +3893,9 @@ dependencies = [
 
 [[package]]
 name = "tree-sitter-swift"
-version = "0.7.3"
+version = "0.7.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fe36052155b9dd69ca82b3b8f1b4ccfb2d867125ac1a4db1dd7331829242668c"
+checksum = "2688c06564afa397313e0db17d140a73e2c6a47f3884794614246167c9dd5dfd"
 dependencies = [
  "cc",
  "tree-sitter-language",
@@ -4233,7 +4245,7 @@ version = "0.1.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c2a7b1c03c876122aa43f3020e6c3c3ee5c05081c9a00739faf7503aeba10d22"
 dependencies = [
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -4307,16 +4319,7 @@ version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
 dependencies = [
- "windows-targets 0.52.6",
-]
-
-[[package]]
-name = "windows-sys"
-version = "0.60.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb"
-dependencies = [
- "windows-targets 0.53.5",
+ "windows-targets",
 ]
 
 [[package]]
@@ -4334,31 +4337,14 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
 dependencies = [
- "windows_aarch64_gnullvm 0.52.6",
- "windows_aarch64_msvc 0.52.6",
- "windows_i686_gnu 0.52.6",
- "windows_i686_gnullvm 0.52.6",
- "windows_i686_msvc 0.52.6",
- "windows_x86_64_gnu 0.52.6",
- "windows_x86_64_gnullvm 0.52.6",
- "windows_x86_64_msvc 0.52.6",
-]
-
-[[package]]
-name = "windows-targets"
-version = "0.53.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4945f9f551b88e0d65f3db0bc25c33b8acea4d9e41163edf90dcd0b19f9069f3"
-dependencies = [
- "windows-link",
- "windows_aarch64_gnullvm 0.53.1",
- "windows_aarch64_msvc 0.53.1",
- "windows_i686_gnu 0.53.1",
- "windows_i686_gnullvm 0.53.1",
- "windows_i686_msvc 0.53.1",
- "windows_x86_64_gnu 0.53.1",
- "windows_x86_64_gnullvm 0.53.1",
- "windows_x86_64_msvc 0.53.1",
+ "windows_aarch64_gnullvm",
+ "windows_aarch64_msvc",
+ "windows_i686_gnu",
+ "windows_i686_gnullvm",
+ "windows_i686_msvc",
+ "windows_x86_64_gnu",
+ "windows_x86_64_gnullvm",
+ "windows_x86_64_msvc",
 ]
 
 [[package]]
@@ -4367,96 +4353,48 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
-[[package]]
-name = "windows_aarch64_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a9d8416fa8b42f5c947f8482c43e7d89e73a173cead56d044f6a56104a6d1b53"
-
 [[package]]
 name = "windows_aarch64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
-[[package]]
-name = "windows_aarch64_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b9d782e804c2f632e395708e99a94275910eb9100b2114651e04744e9b125006"
-
 [[package]]
 name = "windows_i686_gnu"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
-[[package]]
-name = "windows_i686_gnu"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "960e6da069d81e09becb0ca57a65220ddff016ff2d6af6a223cf372a506593a3"
-
 [[package]]
 name = "windows_i686_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
-[[package]]
-name = "windows_i686_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa7359d10048f68ab8b09fa71c3daccfb0e9b559aed648a8f95469c27057180c"
-
 [[package]]
 name = "windows_i686_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
-[[package]]
-name = "windows_i686_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e7ac75179f18232fe9c285163565a57ef8d3c89254a30685b57d83a38d326c2"
-
 [[package]]
 name = "windows_x86_64_gnu"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
-[[package]]
-name = "windows_x86_64_gnu"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c3842cdd74a865a8066ab39c8a7a473c0778a3f29370b5fd6b4b9aa7df4a499"
-
 [[package]]
 name = "windows_x86_64_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
-[[package]]
-name = "windows_x86_64_gnullvm"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ffa179e2d07eee8ad8f57493436566c7cc30ac536a3379fdf008f47f6bb7ae1"
-
 [[package]]
 name = "windows_x86_64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.53.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d6bbff5f0aada427a1e5a6da5f1f98158182f26556f345ac9e04d36d0ebed650"
-
 [[package]]
 name = "winnow"
 version = "1.0.3"
diff --git a/Cargo.toml b/Cargo.toml
index 0804d9b7..484f768d 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -50,7 +50,7 @@ tracing-appender = "0.2"
 time = { version = "0.3", features = ["macros", "local-offset", "formatting"] }
 
 # Database
-rusqlite = { version = "0.40", features = ["bundled"] }
+rusqlite = { version = "0.41", features = ["bundled"] }
 
 # Tree-sitter
 tree-sitter = "0.27"
diff --git a/crates/codegraph-extract/Cargo.toml b/crates/codegraph-extract/Cargo.toml
index 10b46f92..0d39d50d 100644
--- a/crates/codegraph-extract/Cargo.toml
+++ b/crates/codegraph-extract/Cargo.toml
@@ -31,8 +31,8 @@ tree-sitter-c-sharp = "0.23.5"
 tree-sitter-cfml = "0.26.30"
 tree-sitter-cpp = "0.23.4"
 tree-sitter-css = "0.25.0"
-tree-sitter-dart = "0.2.0"
-tree-sitter-erlang = "0.20.0"
+tree-sitter-dart = "0.3.0"
+tree-sitter-erlang = "0.21.0"
 tree-sitter-go = "0.25.0"
 tree-sitter-gdscript = "6.1.0"
 tree-sitter-hcl = "1.1.0"
@@ -46,13 +46,13 @@ tree-sitter-luau = "1.2.0"
 tree-sitter-nix = "0.3.0"
 tree-sitter-objc = "3.0.2"
 tree-sitter-pascal = "0.10.2"
-tree-sitter-php = "0.24.2"
+tree-sitter-php = "0.25.1"
 tree-sitter-properties = "0.3.0"
 tree-sitter-python = "0.25.0"
 tree-sitter-r = "1.2.0"
 tree-sitter-ruby = "0.23.1"
 tree-sitter-rust = "0.24.2"
-tree-sitter-scala = "=0.26.2"
+tree-sitter-scala = "=0.26.3"
 tree-sitter-solidity = "1.2.13"
 tree-sitter-swift = "0.7.3"
 tree-sitter-typescript = "0.23.2"