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1. spotsweeper_py spotsweeper_py Public

   SpotSweeper-py: Python version of SpotSweeper package

   Python 11

2. SpotSweeper_py_paper SpotSweeper_py_paper Public

   Data Analysis in SpotSweeper-py manuscript

   Jupyter Notebook

3. isovita isovita Public

   IsoVita: Learning interpretable compositional features associated with continuous covariates

   Python

4. IsoVita-paper IsoVita-paper Public

   Data Analysis in IsoVita manuscript

   Jupyter Notebook

5. scDNA-homozygous-deletions scDNA-homozygous-deletions Public

   Developing and benchmarking a deletion-specific scan statistic for detecting focal homozygous deletions in sparse single-cell DNA sequencing data.

   Jupyter Notebook

6. scRNA-cross-donor-generalization scRNA-cross-donor-generalization Public

   scRNA-seq cell type classification benchmark showing that random cell-level splits inflate performance due to donor-level leakage

   Jupyter Notebook 1